Authors |
Augusto H.B. Rosa, MSc., PhD Student, Departamento de Biologia Animal and Museu de Diversidade Biológica, Instituto de Biologia, Universidade Estadual de Campinas (Campinas, São Paulo, Brazil); iD ORCID: https://orcid.org/0000-0002-0151-114X; e-mail: augustohbrosa@hotmail.com Eduardo P. Barbosa, PhD, Post doc, Departamento de Biologia Animal and Museu de Diversidade Biológica, Instituto de Biologia, Universidade Estadual de Campinas (Campinas, São Paulo, Brazil); iD ORCID https://orcid.org/0000-0002-8885-454X; e-mail: edu1482@gmail.com Niklas Wahlberg, PhD, Professor, Department of Biology, Lund University, Lund, Sweden; iD ORCID https://orcid.org/0000-0002-1259-3363; e-mail: niklas.wahlberg@biol.lu.se André V.L. Freitas, PhD, Professor, Departamento de Biologia Animal and Museu de Diversidade Biológica, Instituto de Biologia, Universidade Estadual de Campinas (Campinas, São Paulo, Brazil); iD ORCID https://orcid.org/0000-0002-5763-4990; e-mail: baku@unicamp.br |
References |
Andrews S. 2010. FastQC: a quality control tool for high throughput sequence data. Available from https://www.bioinformatics.babraham.ac.uk/projects/fastqc Anisimova M., Gil M., Dufayard J.F., Dessimoz C., Gascuel O. 2011. Survey of branch support methods demonstrates accuracy, power, and robustness of fast likelihood-based approximation schemes. Systematic Biology 60(5): 685–699. DOI: 10.1093/sysbio/syr041 Bankevich A., Nurk S., Antipov D., Gurevich A.A., Dvorkin M., Kulikov A.S., Lesin V.M., Nikolenko S.I., Pham S., Prjibelski A.D., Pyshkin A.V., Sirotkin A.V., Vyahhi N., Tesler G., Alekseyev M.A., Pevzner P.A. 2012. SPAdes: A new genome assembly algorithm and its applications to single-cell sequencing. Journal of Computational Biology 19(5): 455–477. DOI: 10.1089/cmb.2012.0021 Beccaloni G.W. 1997. Ecology, natural history and behaviour of Ithomiine butterflies and their mimics in Ecuador (Lepidoptera: Nymphalidae: Ithomiinae). Tropical Lepidoptera 8(2): 103–124. Bolger A.M., Lohse M., Usadel B. 2014. Trimmomatic: A flexible trimmer for Illumina sequence data. Bioinformatics 30(15): 2114–2120. DOI: 10.1093/bioinformatics/btu170 Brower A.V.Z., Freitas A.V.L., Lee M.M., Silva-Brandão K.L., Whinnett A., Willmott K.R. 2006. Phylogenetic relationships among the Ithomiini (Lepidoptera: Nymphalidae) inferred from one mitochondrial and two nuclear gene regions. Systematic Entomology 31(2): 288–301. DOI: 10.1111/j.1365-3113.2006.00321.x Brower A.V.Z., Willmott K.R., Silva-Brandão K.L., Garzón-Orduña I.J., Freitas A.V.L. 2014. Phylogenetic relationships of ithomiine butterflies (Lepidoptera: Nymphalidae: Danainae) as implied by combined morphological and molecular data. Systematics and Biodiversity 12(2): 133–147. DOI: 10.1080/14772000.2014.899650 Brown K.S. 1977. Geographical patterns of evolution in Neotropical Lepidoptera: differentiation of the species of Melinaea and Mechanitis (Nymphalidae, Ithomiinae). Systematic Entomology 2(3): 161–197. DOI: 10.1111/j.1365-3113.1977.tb00368.x Brown K.S. 1979. Ecological Geography and Evolution in Neotropical Forests. Livre Docência Thesis. Campinas: Universidade Estadual de Campinas. 109 p. Brown K.S. 1987. Chemistry at the Solanaceae/Ithomiinae Interface. Annals of the Missouri Botanical Garden 74(2): 359–397. DOI: 10.2307/2399406 Brown K.S., Benson W.W. 1974. Adaptive polymorphism associated with multiple Müllerian mimicry in Heliconius numata. Biotropica 6(4): 205–228. DOI: 10.2307/2989666 Brown K.S., Freitas A.V.L. 1994. Juvenile stages of Ithomiinae: overview and systematics (Lepidoptera: Nymphalidae). Tropical Lepidoptera 5(1): 9–20. Brown K.S., Freitas A.V.L. 2000. Diversidade de Lepidoptera em Santa Teresa, Espírito Santo. Boletim do Museu de Biologia Mello Leitão (Nova Série) 11/12: 71–116. Brown K.S., Freitas A.V.L. 2008. Melinaea mnasias thera C. Felder & R. Felder, 1865. In: A.B.M. Machado, G.M. Drummond, A.P. Paglia (Eds.): Livro Vermelho da Fauna Brasileira Ameaçada de Extinção. Brasília, DF, Belo Horizonte, MG: Ministério do Meio Ambiente, Fundação Biodiversitas. P. 418. Chazot N., Willmott K.R., Lamas G., Freitas A.V.L., Piron-Prunier F., Arias C.F., Mallet J., De-Silva D.L., Elias M. 2019. Renewed diversification following Miocene landscape turnover in a Neotropical butterfly radiation. Global Ecology and Biogeography 28(8): 1118–1132. DOI: 10.1111/geb.12919 Doré M., Willmott K.R., Lavergne S., Chazot N., Freitas A.V.L., Fontaine C., Elias M. 2023. Mutualistic interactions shape global spatial congruence and climatic niche evolution in Neotropical mimetic butterflies. Ecology Letters 26(6): 843–857. DOI: 10.1111/ele.14198 Drummond B.A., Brown K.S. 1987. Ithomiinae (Lepidoptera: Nymphalidae): summary of known larval food plants. Annals of the Missouri Botanical Garden 74(2): 341–358. DOI: 10.2307/2399405 Fox R.M. 1960. A monograph of the Ithomiidae (Lepidoptera). Part II. The tribe Melinaeini Clark. Transactions of the American Entomological Society 86(2): 109–171. Fox R.M. 1965. Additional notes on Melinaea Hübner (Lepidoptera: Ithomiidae). Proceedings of the Royal Entomological Society of London. Series B, Taxonomy 34(7–8): 77–82. DOI: 10.1111/j.1365-3113.1965.tb01694.x Freitas A.V.L. 1996. Population biology of Heterosais edessa (Nymphalidae) and its associated Atlantic Forest Ithomiinae community. Journal of the Lepidopterists' Society 50(4): 273–289. Freitas A.V.L., Marini-Filho O.J. 2011. Plano de Ação Nacional para Conservação dos Lepidópteros Ameaçados de Extinção. Brasília: Instituto Chico Mendes de Conservação da Biodiversidade. 124 p. Freitas A.V.L., Marini-Filho O.J., Mielke O.H.H., Casagrande M.M., Brown K.S., Kaminski L.A., Iserhard C.A., Ribeiro D.B., Dias F.M.S., Dolibaina D.R., Carneiro E., Uehara-Prado M., Romanowski H.P., Emery E.O., Accacio G.M., Rosa A.H.B., Bizarro J.M.S., Silva A.R.M., Guimarães M.P., Silva N.A.P., Braga L., Almeida G. 2018. Melinaea mnasias thera C. Felder & R. Felder, 1865. In: Livro Vermelho da Fauna Brasileira Ameaçada de Extinção. Vol. 7: Invertebrados. Brasília: ICMBio. P. 137–139. Freitas A.V.L., Brown K.S., Mielke O.H.H., Santos J.P., Vasconcellos-Neto J. 2016. Borboletas da Reserva Natural Vale, Linhares/ES. In: S.G. Rolim, L.F.T. Menezes, A.C. Srbek-Araujo (Eds.): Floresta Atlântica de Tabuleiro: Diversidade e Endemismos na Reserva Natural Vale. Belo Horizonte: Editora Rupestre. P. 317–328. Garzón-Orduña I.J., Silva-Brandão K.L., Willmott K.R., Freitas A.V.L., Brower A.V.Z. 2015. Incompatible ages for clearwing butterflies based on alternative secondary calibrations. Systematic Biology 64(5): 752–767. DOI: 10.1093/sysbio/syv032 Gilbert L.E. 1980. Food web organization and the conservation of neotropical diversity. In: M.E. Soule, B.A. Wilcox (Eds.): Conservation of neotropical biology: an evolutionary-ecological perspective. Sunderland (MA): Sinauer. P. 11–33. Guindon S., Dufayard J.F., Lefort V., Anisimova M., Hordijk W., Gascuel O. 2010. New Algorithms and Methods to Estimate Maximum-Likelihood Phylogenies: Assessing the Performance of PhyML 3.0. Systematic Biology 59(3): 307–321. DOI: 10.1093/sysbio/syq010 Hoang D.T., Chernomor O., von Haeseler A., Minh B.Q., Vinh L.S. 2018. UFBoot2: Improving the ultrafast bootstrap approximation. Molecular Biology and Evolution 35(2): 518–522. DOI: 10.1093/molbev/msx281 Kalyaanamoorthy S., Minh B.Q., Wong T.K.F., von Haeseler A., Jermiin L.S. 2017. ModelFinder: Fast model selection for accurate phylogenetic estimates. Nature Methods 14(6): 587–589. DOI: 10.1038/nmeth.4285 Katoh K., Standley D.M. 2013. MAFFT multiple sequence alignment software version 7: improvements in performance and usability. Molecular Biology and Evolution 30(4): 772–780. DOI: 10.1093/molbev/mst010 McClure M., Dutrillaux B., Dutrillaux A.M., Lukhtanov V., Elias M. 2018. Heterozygosity and Chain Multivalents during Meiosis Illustrate Ongoing Evolution as a Result of Multiple Holokinetic Chromosome Fusions in the Genus Melinaea (Lepidoptera, Nymphalidae). Cytogenetic and Genome Research 153(4): 213–222. DOI: 10.1159/000487107 McClure M., Elias M. 2017. Ecology, life history, and genetic differentiation in Neotropical Melinaea (Nymphalidae: Ithomiini) butterflies from north-eastern Peru. Zoological Journal of the Linnean Society 179(1): 110–124. DOI: 10.1111/zoj.12433 Meyer M., Kircher M. 2010. Illumina sequencing library preparation for highly multiplexed target capture and sequencing. Cold Spring Harbor Protocols 2010(6): pdb.prot5448. DOI: 10.1101/pdb.prot5448 Miller M.A., Pfeiffer W., Schwarts T. 2010. Creating the CIPRES Science Gateway for inference of large phylogenetic trees. In: 2010 Gateway Computing Environments Workshop. New Orleans, Louisiana, USA. P. 1–8. DOI: 10.1109/GCE.2010.5676129 MMA. 2003. Instrução Normativa №003 de 28 de maio de 2003. Diário Oficial da União, Brasília. DF, Seção 1:88. MMA. 2014. Lista Nacional Oficial de Espécies da Fauna Ameaçadas de Extinção – Anexo I à Portaria №444, de 17 de dezembro de 2014. Diário Oficial da União, Brasília, DF. Seção 1. Vol. 245: 121–126. MMA. 2022. Portaria MMA №148, de 7 de Junho de 2022 – Atualiza o teor do Anexo da Portaria №443, de 17 de dezembro de 2014, Lista oficial de espécies da flora brasileira ameaçadas de extinção. Diário Oficial da União, Brasília, DF. Seção 1, 108:74. MMA. 2000. Avaliação e ações prioritárias para a conservação da biodiversidade da Mata Atlântica e Campos Sulinos. Brasília: MMA/SBF. 40 p. Myers N., Mittermeier R.A., Mittermeier C.G., Fonseca G.A.B., Kent J. 2000. Biodiversity hotspots for conservation priorities. Nature 403(6772): 853–858. DOI: 10.1038/35002501 Neethiraj R., Hornett E.A., Hill J.A., Wheat C.W. 2017. Investigating the genomic basis of discrete phenotypes using a Pool-Seq-only approach: New insights into the genetics underlying colour variation in diverse taxa. Molecular Ecology 26(19): 4990–5002. DOI: 10.1111/mec.14205 Nguyen L.T., Schmidt H.A., von Haeseler A., Minh B.Q. 2015. IQ-TREE: A Fast and Effective Stochastic Algorithm for Estimating Maximum-Likelihood Phylogenies. Molecular Biology and Evolution 32(1): 268–274. DOI: 10.1093/molbev/msu300 Rosa A.H.B., Ribeiro D.B., Freitas A.V.L. 2023. How data curation and new geographical records can change the conservation status of threatened Brazilian butterflies. Journal of Insect Conservation 27(3): 403–414. DOI: 10.1007/s10841-023-00464-0 Schmieder R., Edwards R. 2011. Quality control and preprocessing of metagenomic datasets. Bioinformatics 27(6): 863–864. DOI: 10.1093/bioinformatics/btr026 Twort V.G., Minet J., Wheat C.W., Wahlberg N. 2021. Museomics of a rare taxon: placing Whalleyanidae in the Lepidoptera Tree of Life. Systematic Entomology 46(4): 926–937. DOI: 10.1111/syen.12503 Willmott K.R., Freitas A.V.L. 2006. Higher-level phylogeny of the Ithomiinae (Lepidoptera: Nymphalidae): classification, patterns of larval hostplant colonization and diversification. Cladistics 22(4): 297–368. DOI: 10.1111/j.1096-0031.2006.00108.x |